notes on the Life sciences: revolutions in
Lynn Margulis, Symbiotic Planet, A New Look at Evolution, (New York, Basic Books, 1998).
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| Prologue |  |
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3 Individuality by incorporation 7 Ashore 8 Gaia |
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A Coral reef is comprised of many different species, whose members are creatures which actually are animals that have algae or protoctists living in their flesh, this is referred to scientifically as endosymbiosis. |
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"As a species we cling to the familiar comforting conformities of the mainstream. However,'convention' penetrates more deeply then we tend to admit. Even if we lack a proper name for and knowledge of the history of any specific philosophy or thought style, all of us are embedded in our own safe 'reality.' Our outlooks shape what we see and how we know. Any idea we conceive as fact of truth is integrated into an entire style of thought , of which we are usually unaware."
Pp. 2-3.
Prologue
"Call the cultural constraints 'trained incapacities,' thought
collectives,'social constructions of reality.' "
p. 3.
"Like those of everyone else, the scientists hidden assumption affect his or her behavior, unwittingly directing thought."
p. 3.
Symbiosis, "our lack of awareness of its prevalence."
"symbionts are not obvious, but they are omnipresent"
"we are symbionts on a symbiotic planet."
"Physical contact is a nonnegotiable requisite."
p. 5.
Ivan E., Wallin, he believed that "new species
arise though symbiosis."
Symbiogenesis
fruit flies bread in progressively warmer temperatures, eventually became distinct form the parent or originating species.
p. 7
"That turned out to have something to do with a parasite." !
"Symbioses are like flashes of evolutionary lightening."
8
Platymonas, single celled green algae in worms on the
coast of France, Brittany
9
"we animals, all thirty million species of us, emanate from the microcosm. The microbial world, the source and well spring of soil and air, informs our own survival."
p. 10.
chlorella, Ophrydium balls of jelly embedding
green chlorella algae
Kefir is symbiotic -- 25 different kinds of bacteria and yeast
2 : Against orthodoxy
13
her collegiate training
"I adored Crow's general genetics course: it changed
my life."
The superb science of the University of Chicago...
"Human and other animal consciousness, as well as other types of biological beauty and complexity are properties of our coevolving, pointillist bacterial ancestry."
"cellular inter living,... produced everything from
spring-green blooms, to warm, wet mammalian bodies..."
p. 20.
"All beings alive today are equally evolved."
p. 20.
"The findings of the importance of symbiosis in evolution
have forced us to revise the earlier nucleocentric view of evolution as
a bloody struggle of animals.
pp. 19-20.
"...symbiosis, beginning as an uneasy alliance of distinct
life-forms, may underlie the origin of major evolutionary novelty."
p. 20.
"The genes in other words are not necessarily in the
nucleus."
"the mitochondria contain their own genes."
p. 22.
We where taught how, through science, we could go about
to answering important philosophical questions."
Serial endosymbiosis theory and Symbiogenesis
p.29
SET Serial endosymbiosis Theory.
p. 31.
3 : "Individuality by incorporation."
Symbiosis
coined in 1873, by German botanist, Anton deBary,
living together of very different kinds of organisms.
p. 33.
Sym + biosis [Latin: with + living] ; living with
or living together
the existence of two distinct species of organisms
in such a manner that the genetic success of one is tied to the genetic
success of the other.
examples of symbiosis:
type of Being, producing species + consuming species
lichens, algae + fungus
corals, zooxanthelae algae + animal polyp
legumes, cyanobacter root nodules + plants
rhododendron, mycorrhizae fungus + forest trees (plants)
termites, gut bacteria + other gut bacteria
Not a special case in biology but an obvious successful pattern.
Question: Did bacteria build plants, animals and fungus in order to best survive extreme conditions, competition for scarce resources , or to establish new territories in which to thrive?
Spirochetes become undulipodia (motile
bacteria become an organelle to move cytoplasm)
p. 35.
Cyanobacteria are relatives of chloroplast
p. 36.
mitochondria are relatives of oxygen breathing
bacteria
p. 38.
4 : The name of the Vine
"names of living beings seem harmless enough."
taxonomy defined
51
Gregory Bateson "THE MAP IS NOT THE TERRITORY."
"...such trees are idealized representations of the
past. In reality the tree of life often grows in on itself."
Anastomosis, branches forming nets"
52
Ivan Wallin's 1920s suggestion that chloroplasts and mitochondria
"originated as symbiotic bacteria."
53
17th century origin of bacteria classified as "animalcules"
"Language can confuse and deceive."
55
"Most bacteria a no more harmful than air..."
Wallin's colleagues confused the map with the territory."
55
The idea of plants, animals, and germs "this idea is
as dangerous as it is prevalent"
56
Ernst Haeckel (1800s) added protists to Anton van Leeuwenhoek's animalcules
(1600s)
57
Linnean system, late 1700s, had focused on sexual organs to distinguish one species from another, one genus from another and one order from another.
58
Haeckel's championing of evolution
established Monera as the phyla for radiolarians and
foraminiferans
59-60
Herbert Copeland
took the term (1860) "protoctista" and in 1956 subdivided
the Monera kingdom
60
Whittaker at Cornell refined Copeland's separation in
1959.
Five kingdom system:
"All protoctists evolved from bacterial symbiosis."
62
protoctista gave rise to plants, animals and fungus.
| / Zoomastigotes ----------> | Animals | |
| Protoctista | ------ Chlorophytes --------------------> | Plants |
| \ Chytrids ------------------------------> | Fungi |
Diagram
63
"viruses today spread genes among bacteria and human
and other cells."
64
Prokarya versus eukarya as major divisions in
the five kingdoms.
64
Carl Woese three domain system: (RNA based, RNA for building
ribosomes differ
The reproductive staretgies of each grouping differ remarkably:
p. 65-66
ribosomes are the place in the cell where transfer RNA inserts a cloned of DNA from the nuclei and the place in the cell where proteins are constructed from the available amino acids.
"The move toward evolution based taxonomic classification
systems has taken hold."
68
5: Life from Scum
seashore mats -- photosynthetic bacteria in worms,
such that the worms lose their capacity to use their mouths, originally
used for eating.
"These colorful seaside expanses, called 'microbial mats,' enchant me-- a living landscape just where the sea meets and rolls back and forth over the land"
"death is part of life."
69-70
"The properties of minimal bacterial life, first life,
can be inferred by several approaches."
1 comparatively what do all living things have in common?702 paleobiology -- microfossils in rocks of particular ages.
3 attempt (lab) to remake a cell
4 the bacterial cell, today's minimal unit of life,...is where we must begin."
5"Prelife, with a suitable source of energy, inside a greasy membrane, grew chemically complex."
Harold J. Morowitz "amusing book on mayonnaise.
71
3.5 billion year old rock from South Africa, Swaziland,
oldest bacterial evidence.
72
Event Age percent ratio of duration
Big Bang singularity, 20,000 million years ago 100%
Earth 4,600 million years ago 23% >1:5
life 3,500 million years ago 17.5% >1:6
6. Sex Legacy
"when bacteria wildly reproduce they need no sex to do
it. The bacterial sex that responds to certain environmental contingencies
is occasional."
88
Sexual processes, the merger of attracted beings, probably
originated as did the early symbiosis."
"meiotic sex began long after bacterial sex as abortive
cannibalism in certain protists."
"Symbiogenesis is far more splendid than sex as a generator
of evolutionary novelty."
89
Sex here emerges as a kind of median or medial along
a spectrum of intimacy from
living together (touching) <-------------Sex --------------------->
living apart (remoteness)
intimacy separation
"programmed death is a nonnegotiable consequence of the
sexual mode of life."
"is linked intimately with the imperative of plants
and animals to die."
90
"Animals, all of them, an essential 30 million species
belonging to nearly forty phyla, revert to a single-cell protist -like
stage in each generation....Mortality is the price they pay..."
91
The Cambrian, (Preston Cloud)
"All animals are aerobes."
95
female sex, parthenogenesis.
99
"Abortive cannibalism in single celled protoctists resulted
in a truce called sex."
100
stressed conditions encourage protists to eat anything
and everything.
101
7. Ashore
Star Trek is a depauperate (plantless, bacterial less,
machino/macho) sort of sci fi.
"Ecosystem services"
"An ecosystem is the smallest unit that recycles the
biologically important elements."
105
Carbon and Nitrogen cycles given as examples of essential
nutrients
"I prefer the idea that Earth is a network of ecosystems
(as a set of communities) over any personification of Mother Gaia."
106
"The material and energy needs of organisms in any
ecosystem are met by recycling all the scarce chemical compounds required
for life maintenance.
106
Land dwellers may owe their hold on dry ground to specific
symbioses between plants and fungi."
"Plant roots and fungi grow together into bumps on roots
called mycorrhizae."
107
fungal fusion to explain the coevolution of green plants,
450 million years ago
107
lichens symbiotic associations of algae,
fungi, bacteria.
108
"animated water", after Vernadsky, the capacity of plants
to pump water
90% of plants have mycorrhizae associated with their roots.
110
What has emerged is the mathematical outline of
an overlap between natural selection and global temperature regulation."
"global temperature regulation is a paradigmatic example
of Gaian regulation."
stabilization of temperature is a product of the daisy
world models.
127
SET diagram of the phylogeny of Moneran descendents:
Prokaryotic organisms:
Monera
Archaebacteria, 
Eubacteria, & Cyanobacteria
Eukaryotic organisms:
Protoctista
all algae (red, green, brown
cilliates, slime mold
water molds
Fungi
mold
mushrooms
yeasts
root mycorrhizae
Animalia animals
sponges
jellyfish
arthropods
snails, mollusks
fish, birds, reptiles
mammals
Plantae plants
mosses
ferns
conifers
flowering plants
p.31, 129.
"We people are just like our planet mates. We cannot put an end to nature; we can only pose a threat to ourselves."
128.
SET means Serial Endosymbiosis Theory.
classifications of all eubacteria -- The eubacteria are more complex, and common, than the archaebacteria. It is the eubacteria that most people are talking about when they say bacteria, because they live in more neutral conditions. They can be found everywhere around us – in our bodies, our food, etc. There are four phyla of bacteria, some of which are divided into subgroups.
Proteobacteria is one of the largest phyla of all the bacteria. Many are gram-negative. They are divided into several subgroups, such as enteric bacteria, chemoautotrophs, and nitrogen-fixing bacteria. The enteric bacteria live mainly in intestinal tracts, like E. Coli. The chemoautotrophs oxidize chemicals in minerals to obtain energy. The nitrogen-fixing bacteria are essential to many ecosystems – one type converts the unusable nitrogen in the atmosphere to ammonia, the form plants can use most easily.
Cyanobacteria are photosynthetic, like plants, which means that they use the sun’s energy to make food for themselves. They are thought to be the second organisms in existence, because they give off oxygen as a byproduct. This allowed aerobic organisms (ones that need oxygen to survive) to develop. They are found in the water and were once thought to be blue-green algae (however, they lack a membrane-bound nucleus and chloroplasts).
Spirochetes are [ gram-negative -- a gram stain is a technique for classifying bacteria ], spiral-shaped, and heterotrophic. Some of them live in the presence of oxygen, others don’t. They may be parasitic, living symbiotically (where two organisms live off each other), or free-living. One type of spirochete causes syphilis.
Gram-positive bacteria are not all gram-positive, despite the same. They are grouped together due to other similarities. This phylum includes the strain of streptococcus bacteria that causes strep throat. It also includes the bacteria that produces yogurt, by growing and fermenting in milk (producing lactic acid). These bacteria also produce many of our antibiotics.
Welcome to the world that bacteria have built for us, maintain for us, and recycle necessary, but scarce materials for your children and all our descendents to reuse.
